Scaffold Ga0211554_10128495

Overview

Basic Information

• Taxon OID: 3300020431
• Scaffold ID: Ga0211554_10128495
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1264
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_145
• Coordinates
  • Lat. (^o): 39.2173
  • Long. (^o): -72.0327
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005537	Metagenome / Metatranscriptome	397	Y
F008307	Metagenome / Metatranscriptome	335	Y
F043149	Metagenome / Metatranscriptome	157	N
F071633	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211554_101284951	F071633	N/A	DGNLSYQKIPFNYSDQPITCEKMYNESIKYVENPDYKEGNGQVWMLTKYKNKNVIAHWCKDSKGNYVR
Ga0211554_101284952	F005537	AGG	MSDNVKFISEIERLLKQKQNDYGHFDHTSYVMVGIMEKYLSIHNNQDVKIPLKFFGLFMIFLKCWRVFQSENYKKDSFDDINGYTELLRRLVIDENKTKR
Ga0211554_101284954	F008307	AGTAG	MVKVLKTSSLELEADFEEIFDGATVEEATEKAHNQKMPSEFAKVNITNNKLIKANVKMVGEENDELKK
Ga0211554_101284955	F043149	AGGAG	MSLRNSNVRLYNKLDKAHKKVYAAKDKGRQCVHTLKAFKEYNQLFRRIVEAENKDARFLY