Scaffold Ga0211554_10126305

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211554_10126305

Scaffold Ga0211554_10126305

Overview

Basic Information
Taxon OID	3300020431 Open in IMG/M
Scaffold ID	Ga0211554_10126305 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1278
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_145
Coordinates	Lat. (^o)	39.2173	Long. (^o)	-72.0327	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015345	Metagenome / Metatranscriptome	255	Y
F086311	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211554_101263052	F015345	N/A	LTTVDIFGIKERIVDILKSDTANLWDSTPSSKTKFRKIEAGSPSPKAIQEPPLPRLWVTSDDVVANVSQVSIIENNIHLGNEYDIRIKILFVVEAKDGQKTEEDIDDFTKSIIEKLETNYDLRDGAESTRLAESSQVTQIMDLPSMFRGDRVKGRVIKFKVIVRT
Ga0211554_101263053	F086311	GGAG	MTNGTEITIQSEDVGTIIKGTAKSRSGTTDTIIDLNDTTAIVINLRDPDGVVTQHTATATNADGGTDGIWKFTTSSAIFSRNPGIWYIQAKYSLAGGTVFYSNIKSLSVGEVLL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.