Scaffold Ga0211554_10119889

Overview

Basic Information

• Taxon OID: 3300020431
• Scaffold ID: Ga0211554_10119889
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1320
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_145
• Coordinates
  • Lat. (^o): 39.2173
  • Long. (^o): -72.0327
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053965	Metagenome / Metatranscriptome	140	N
F077161	Metagenome / Metatranscriptome	117	N
F090238	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211554_101198891	F053965	N/A	YKTSPINSPAEREAKEIITQITESEWWATQVGTKFKWPKKYDNKKQQFGFREPQFVFIGNFIFARHEFCPGCRLYKGLLTYTNGQMVYAKPYNK
Ga0211554_101198892	F077161	GGA	MRNLTTSEIQSRFDRHAKLHRFEVDELFKNIKHKPFTEIQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYVGILRDIVTEEIEHIQDSITKQDIKKAVGQSTFDFDKRLLTTLSHNMKQAHHVVGHYSTKFDNPYFRSRCLLTKQQELIPHYGYQFYGDTWRMMKTTMKAKRNTLKNFIRQTTGNDEKTFVDLKYWYITHFKDHKLWKKSMDYIIDHCVKDVKMTYEGLQKAEQFNNIGRAKA
Ga0211554_101198893	F090238	GGAG	MRIHVEEGDEAYAEFHTHDGTTELWLGGHLTIWGLFDTLIHEGLHEAIEDNTDQPTTEKQDHWVIQRLCFN