Scaffold Ga0211554_10021764

Overview

Basic Information

• Taxon OID: 3300020431
• Scaffold ID: Ga0211554_10021764
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3815
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_145
• Coordinates
  • Lat. (^o): 39.2173
  • Long. (^o): -72.0327
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007825	Metagenome / Metatranscriptome	344	Y
F016897	Metagenome	244	Y
F044192	Metagenome	155	N
F054159	Metagenome	140	N
F059444	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211554_1002176411	F007825	N/A	MTIQVHYKTKKELKNNVGSELDYSETNIFKDEYTSSGVVIGCDVDRKWFAKITIKNNIIERVQ
Ga0211554_1002176413	F054159	N/A	MTKKITLKYIDNQSHGYIQISKYDLEGLDIDIKDISSQYSFYNENNACYYLEEDCDANKLHTQLRLKGYEIFDYKTNHVALNYMNDPIFKRLSNDI
Ga0211554_100217642	F044192	AGG	MYIDRYEIVSYSRKWNNGKQNKKAEITNYCDNTYHGMEGKKFLQLLSDLDDAWHQHEGKDCVVTVSFEDPKERD
Ga0211554_100217644	F016897	GGA	MLKITKQLSKRELAKILFNTLKKENGLAIRMIVRDYNNKQMENKNVKQIRRLATNS
Ga0211554_100217645	F059444	N/A	MKKEEEIQQQIYEIESQYPNLHIDLHRDQFKSGDVDKLHLLYNQLEEVKKYGDVNQGLGTWNGYEYVKNN