Scaffold Ga0211554_10002410

Overview

Basic Information

• Taxon OID: 3300020431
• Scaffold ID: Ga0211554_10002410
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12928
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_145
• Coordinates
  • Lat. (^o): 39.2173
  • Long. (^o): -72.0327
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067736	Metagenome	125	N
F077925	Metagenome	117	N
F082699	Metagenome	113	N
F085682	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211554_100024103	F067736	AGG	MSFNPSDEKPLSAYTDEELLSFLGIESTLEDVFRNHNMTDEEKREFLLEKAEEKNQKYI
Ga0211554_100024104	F077925	N/A	MVDTNKLYKENLKKIVGDCFFSVRYYSTNKGRYENYGSLLLNVKKHLKGGESTAKEHTFTAYDMSAKHYRSFVISKTAFVKCGQFYTQDAILSGKKNVI
Ga0211554_100024106	F085682	AGGAG	MSIDLSKYEKLIRLGTLTEEYEFAQDELHGILKLQQDWDTEQEIFVLLDRIAKELSRRRVASDEKAEFMRRLP
Ga0211554_100024109	F082699	N/A	MPTNGRNLQEMIKLIKKVLGVDKKIESLDSKLYQVEKALTSLEYKVADLDLIVTFLNELRKEKNNANK