Scaffold Ga0211554_10000890

Overview

Basic Information

• Taxon OID: 3300020431
• Scaffold ID: Ga0211554_10000890
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22095
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_145
• Coordinates
  • Lat. (^o): 39.2173
  • Long. (^o): -72.0327
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002182	Metagenome / Metatranscriptome	586	Y
F002902	Metagenome / Metatranscriptome	522	Y
F059878	Metagenome	133	N
F077787	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211554_1000089017	F002902	AGGAGG	MAGLTSTKVVKNSNGLGPKTRIINLAKSNMTQDELDAAIRYLAAGDVAGTNDAHTVAGVSCLTESGVFTPGTTDAVQVAIQGTGAFTAASNFGTGSTGVTSSLLADFA
Ga0211554_1000089029	F059878	N/A	MNQGVDMYKEKARKKKDVNPFMIKKGFYITEMNMGHVPGDGYELISTSDVAGPFKTLDRAREIFKKIVCGVDYRNHWDFGIVGPKHRPNGYETPWYSFKEREDY
Ga0211554_1000089035	F077787	GGAGG	MSGKKQFSVVLSYDVQKTFIVEARDEDEAYDIAYNGEGEVDNEDWEYRE
Ga0211554_100008904	F002182	GGAG	MWPYTDEEMSWVSGQSIPTKKKRVSNQTADGQPPKTQDYRKHDWAIKTTIEVDGKHYVVPVQI