Scaffold Ga0211554_10000873

Overview

Basic Information

• Taxon OID: 3300020431
• Scaffold ID: Ga0211554_10000873
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22317
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (77.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_145
• Coordinates
  • Lat. (^o): 39.2173
  • Long. (^o): -72.0327
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018721	Metagenome / Metatranscriptome	233	N
F040108	Metagenome	162	Y
F045112	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211554_100008732	F040108	AGAAGG	MYNIFQIKISKEVSDYVNSNGLGHTGGEQKYPIYEAHMRLRHSFDDKIQFKNTDFQHYTKVCEVKKDAGLVCDGDSWMLRDLEDVFAVLNGRYYDEDTNTDIVHDAHVSGYKMKTITRKDGEVVTYRDMHSLSVGDIVEDVDNGTFHIVAGFGFEDITSNIVKEVA
Ga0211554_1000087320	F045112	AGGTGG	MLLMTKPYGTQMTKLDHWKNVCKLHWKEIVTLSIALHWVVDLLILGPIVFAVGYFTGVHFGH
Ga0211554_1000087326	F018721	AGGA	MYYIIDNTNQAIHREPNKKPYASTQYKTTGAAKAGITRTVKYYQKAYDQVAECVANGEPEYHAPMHNAYRDATESHFNLTHKQFASSYTIVAVEDYVEPMITKTGICPGTGKKITVTEGINTPHYMSTLSESYWSA