Scaffold Ga0211622_10272016

Overview

Basic Information

• Taxon OID: 3300020430
• Scaffold ID: Ga0211622_10272016
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 725
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_123
• Coordinates
  • Lat. (^o): -8.8951
  • Long. (^o): -140.3174
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025719	Metagenome / Metatranscriptome	200	N
F054094	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211622_102720161	F054094	AGGA	MKPKNLAETIDNNDYTRRNRFTGESIELTKEEADKHDKIFYHEALATLEDKQLGTGASKH
Ga0211622_102720163	F025719	N/A	LKEAVYFSICYKPKKYNGRPIYRNAKWDDKCKIGNGYIIYYDRDRGGYRCASGESAISIGQGSMNNG