NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211622_10120672

Scaffold Ga0211622_10120672


Overview

Basic Information
Taxon OID3300020430 Open in IMG/M
Scaffold IDGa0211622_10120672 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1130
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_123
CoordinatesLat. (o)-8.8951Long. (o)-140.3174Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013522Metagenome270Y
F080623Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0211622_101206722F080623AGGAMNRENTNIDTIIVDLIMDHFNIQTMEGKSPFLSDDEFDRIVDVAESIYLKKVVIQEKPAL
Ga0211622_101206723F013522GGAMNKHSILKRIKKLAQLCEDTEPTSKELLNMDRLFSQDLIAVDTMYLQVDRDQYSRDDLIDIMKECNWIWKKRQKVKQVGWDEYNHIDRRIEESLRAGRKIEAIKLYRQHRIDNGTDCSLKQAKDYIDKLLIKMGFDS

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