Scaffold Ga0211622_10065409

Overview

Basic Information

• Taxon OID: 3300020430
• Scaffold ID: Ga0211622_10065409
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1595
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_123
• Coordinates
  • Lat. (^o): -8.8951
  • Long. (^o): -140.3174
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000999	Metagenome	809	Y
F002949	Metagenome	518	Y
F016533	Metagenome	246	Y
F054094	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211622_100654091	F054094	AGG	MKVIYQPIHDNKDYTRRNRFTGESIELTKEESEKHDKIFYHEALATLEDKELGEGASKHWQEMRNLLDWFMKKNPK
Ga0211622_100654092	F000999	GAG	MNRDKLMAQTDFIVSWHAKKYNKVIFRVGNLSKEGCRTWEQNGKKYMCFWDTVLERYTTCIDPMITYKRKVS
Ga0211622_100654096	F016533	N/A	MNKKITIIWGSQKQKKKTYKFKTEEQLKYFMKGVDEAEGWLSYEIKES
Ga0211622_100654097	F002949	AGGA	MKSKRVNHNDLLPWFTDDHGQLPEEYLKGCQKFFDELQATSNKRQATSLTQLNDKN