NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211622_10062853

Scaffold Ga0211622_10062853


Overview

Basic Information
Taxon OID3300020430 Open in IMG/M
Scaffold IDGa0211622_10062853 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1630
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_123
CoordinatesLat. (o)-8.8951Long. (o)-140.3174Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039665Metagenome / Metatranscriptome163N
F098019Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0211622_100628532F039665N/AMDYRSYFSSEEWDLLRAAPFNVQVLVSQADDDRELDEIGPLLDILMSYSGDAFIEEVFRDSLEATEESRLLKEPREALDQVSSAVQLIKNNIANSTLSEDTLDTFFGQLLDIAEKTAAADIEGLEAEEDSIINLLKQKFS
Ga0211622_100628533F098019N/AMSLESIFTSDQLDALIQAPLDVAVLAAEADFELEDIELQELETQLTTYEGNEYVKELFSSAKSLLDKEFSYSLSTSRDNLSNLNEILSSPIKYDECIPEFKRALLRMAMAIVVINDEITGSEKTQVEEIANYLDWSVTDI
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