Basic Information | |
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Taxon OID | 3300020430 Open in IMG/M |
Scaffold ID | Ga0211622_10016526 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3682 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (100.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_123 | |||||||
Coordinates | Lat. (o) | -8.8951 | Long. (o) | -140.3174 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004493 | Metagenome | 436 | Y |
F018289 | Metagenome | 236 | Y |
F037208 | Metagenome | 168 | Y |
F048640 | Metagenome | 148 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211622_100165261 | F037208 | AGGAG | MFVILATKPLNDGTQGFRFNFLGNKGIYRKRKATNRYGKSTGDVMTGYHFGKRSVYFEQATPKRKLYHFAG |
Ga0211622_100165262 | F018289 | AGGAGG | MTEFNRSQLNLLRKQLQETIDNANLSDITIDVGNCTYNGGEATFKVKCILKGAKTREQIDLEYYAEMHGIDTTAIAKLQGEDMSIIGYKSRARKKPWILQRLRDGAEFVCSDHTAKQFFKKREEIADAT |
Ga0211622_100165263 | F004493 | AGGAG | MQHKVTKNKELGFTDEQWGQLIDGNGLLIMWFLEWNNKDWHGTPDMSIQDFFTKKYNQSAGCNPWPIKGAVSLDGKFVSTHQDDEDLEPYFMIDTDDGVGYIYPYAFVALPTKAGGHTIVRMD |
Ga0211622_100165265 | F048640 | AGGA | MQPKELHAHARIKFEPTRVQKQLECRLFGETFRSVAAAARKFELSASTVYQWHHERRHRETFPKTKRWDRWRAEHEVADTNHANAG |
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