Scaffold Ga0211622_10005502

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211622_10005502

Scaffold Ga0211622_10005502

Overview

Basic Information
Taxon OID	3300020430 Open in IMG/M
Scaffold ID	Ga0211622_10005502 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8141
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (20.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_123
Coordinates	Lat. (^o)	-8.8951	Long. (^o)	-140.3174	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012280	Metagenome / Metatranscriptome	282	Y
F030730	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211622_1000550210	F012280	N/A	MPIKLKPSTKEYVRDARGKMTSKWTWKHYTVSNTSTEELLKLLVMDTQRKNKSKIQKELTKRGVQWEK
Ga0211622_100055029	F030730	N/A	MGKVKEKIIEKGAGLIAKGKTKKKLEKVVPKPLAKQVAKQVGKATEKVTSAALDLWNKLK

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