Scaffold Ga0211622_10004468

Overview

Basic Information

• Taxon OID: 3300020430
• Scaffold ID: Ga0211622_10004468
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9510
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (42.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_123
• Coordinates
  • Lat. (^o): -8.8951
  • Long. (^o): -140.3174
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F011846	Metagenome / Metatranscriptome	286	Y
F045677	Metagenome	152	N
F048238	Metagenome	148	Y
F056529	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211622_1000446812	F056529	N/A	MATKHGNRVYIQVLLEPFRGELFMQEANAQGIKPSALIRQLVYDYLAENTKEEIYCEALVNDKQKWQDAVDARLEGRARNRRSKIDQSEQSIDASSSPM
Ga0211622_1000446813	F006772	N/A	MERLNKAIQLATTADLQRAAMFLEGARKVRQGSRRQRTNARSAQATAWKKKVDDSITW
Ga0211622_1000446815	F048238	N/A	MGTKNVHLHYCQIADEHCPLAITRFTSFDADDKPLAVEQVTYESNIDYMERQVINALRCDVEVSILTSTPIHEFKRLHHIFKND
Ga0211622_1000446816	F045677	N/A	MKKVETLLPEELIERLSAEAKEKGIHRSELIRERLSQPPNHFGLTTNDFHKAVTKVRRRSSYGLDRQQAESLVATVFNELFSPGHGD
Ga0211622_1000446819	F011846	GAG	VKFSSGFLATIEKENEGSSSADNYLRYTKLDQGKPANFCLLEQDPLEYWLGWGVAKENDSMKPFRFLEQPSQEDIDLELGSDYVQSMNYDKTAVRKPSQCLCWPVYNWDAERVQVLEVSHISLARQFAKYGLNKKYSRNLLDWDFELSKIKADMVKYELLIVPRDEDEHDEAAMEKAWKAAEKAGFDLNRIVTGGDPFSEG