Scaffold Ga0211622_10002942

Overview

Basic Information

• Taxon OID: 3300020430
• Scaffold ID: Ga0211622_10002942
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12867
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (97.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_123
• Coordinates
  • Lat. (^o): -8.8951
  • Long. (^o): -140.3174
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064204	Metagenome	129	Y
F065216	Metagenome	128	Y
F081882	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211622_1000294215	F081882	AGGAGG	MSNQIKLTIDISDELLNKIITVIALSGATPPTPMGGVPMVMQKSPAKEPERPSMGFQPPTKEGDK
Ga0211622_1000294227	F065216	AGGAGG	MAEPMDKIEVIMKTAKMLADENRGEWSGDVHEFATASAYITSDERLWLTSHDVKVFHKELKDGAFVSEYAYVSASYADGQPLLVVTDVDTGKV
Ga0211622_1000294231	F064204	GGAG	MIKINRNKKAIQIGELVIVKKWVTNKGYVYSDRIGIVMADEGVDELGQEQWGRWHVALENGDYIGCSSNEIEVIQEVDDGSDRTTALSENH