Scaffold Ga0211622_10000027

Overview

Basic Information

• Taxon OID: 3300020430
• Scaffold ID: Ga0211622_10000027
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 195715
• Total Scaffold Genes: 218
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (10.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_123
• Coordinates
  • Lat. (^o): -8.8951
  • Long. (^o): -140.3174
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052890	Metagenome	142	Y
F063837	Metagenome	129	Y
F066916	Metagenome	126	Y
F068524	Metagenome	124	Y
F082800	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211622_10000027100	F052890	N/A	MNKLDTLYPTEVYSDYLVDPSIMDSIFEDTGEKRKVIFYDYTDTNNHTNFIKDISSEFLTMNGHKHNPDRWYMDVIRYNLQNEEKRVKSGLAWHVENDNYPNVITVLMYLRLDEGIIDGNLRYKDKENVKKVLEITSGTTVIMDGNVPHKPQDPYGTGKRDLIIISFKKD
Ga0211622_1000002712	F063837	AGGA	VNRPLRKNNMNCQNNWVEMTDEELAIAAYGEGIPPESLKDEEEGGETIIITVSMDSETTQMPFGTVNTGPFLELFWRKTGADCDGEEELMQLPDGNTYLISLAEHCE
Ga0211622_10000027184	F066916	N/A	MEIIKYLIFIGIITLIFVIYSEYSIGQILFRPDSSGIITMNLNSLLGFLANPFYRRDLWTWNTLDINYAFVLIYSLCIYYLF
Ga0211622_100000275	F068524	N/A	MSMNTNTIANIELSESENEFLQFRHETTRSRIIKYIENGLPFDKAVIKEAGESLIAYYEYIKDNIKDEDKHKLNEFDDIPLTYHGEDLNEFEKDIFDRLPNIGKWQWSNYTRVWRALEEADECLMEFVYHEANYLCQAPQNST
Ga0211622_1000002782	F082800	N/A	MNYNFYILLILSLLIGSPVVFLKNDILKEFSITEEIIYADIGILIIASSIYFLYENKSFKHLIRHFDSDIIYKYILYVTLITIGLLIGNYIVKNEGKVVKYKTFQRSLSLILLVALGHFIFGERLTKNKCLGIGIILIGLYIFDK