Scaffold Ga0211581_10045540

Overview

Basic Information

• Taxon OID: 3300020429
• Scaffold ID: Ga0211581_10045540
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000614 (ERX556134-ERR599032)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1798
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_128
• Coordinates
  • Lat. (^o): 0.0328
  • Long. (^o): -153.705
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F027536	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211581_100455401	F005813	GAGG	MRLYKNSNGVWAGTQADARKYCGKAYSTVDVPTDKPGLLGFLNLNQVGSLASSPTLEEVRTGEPTTSAMSWFRWSYDCMCRGQYEDAKEHLAKALEMSRKEKTDEE
Ga0211581_100455403	F006217	AGGA	MIELLLSVIEEPNQIHKYCMSKHDHWTGRAACVQELRHAQRKLEVERLRQFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYYIGSDKVKRSKC
Ga0211581_100455405	F027536	AGGAGG	MKVSPDGWRYKVTPIDRVINDCRRRADDAWWDGNDEEARLHEQEQKLYEKDKEEGVLWVPNF