Scaffold Ga0211581_10039796

Overview

Basic Information

• Taxon OID: 3300020429
• Scaffold ID: Ga0211581_10039796
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000614 (ERX556134-ERR599032)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1942
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_128
• Coordinates
  • Lat. (^o): 0.0328
  • Long. (^o): -153.705
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004819	Metagenome / Metatranscriptome	422	Y
F054087	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211581_100397963	F054087	AGGAG	MPRFRLLVDTDSIVEEGEHLEDLFKDGIEAETEEEAERIVSAKVKELMYGGPYYTLTDEE
Ga0211581_100397964	F004819	AGGAGG	MEFLPREEDNRLDDRTARFHARVMKEDLATLPYVFNTANRDINIARASNYVTWDYGKDMWCSVDHLMMNFYIKAKTTDTREYLEDKINRDVVKLIKGPRYYEQAKVYCMIDMHYPEDESIYDLVKKPKKDRNAHSISGDEGEITYHVTLHIQECNNTDLAVYDNEDRGDYFDLHGTNLDEVA