Scaffold Ga0211521_10505649

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211521_10505649

Scaffold Ga0211521_10505649

Overview

Basic Information
Taxon OID	3300020428 Open in IMG/M
Scaffold ID	Ga0211521_10505649 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	518
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_025
Coordinates	Lat. (^o)	39.3757	Long. (^o)	19.4167	Alt. (m)		Depth (m)	50
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032444	Metagenome	180	Y
F052889	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211521_105056491	F032444	AGG	MTKFTTKYQYVSWNDNVEGSSKRADIKKTKLENQGYNLISTQAQIFSGLMVYKNPNYKTKARNKXKQIQIIFIM
Ga0211521_105056492	F052889	GAGG	MKTNTDHIYNVALTYACFKSGPKRVDENLLRNMFKDLCLLSDEYAFDYKQELKNILTESEDQ

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