Scaffold Ga0211521_10397848

Overview

Basic Information

• Taxon OID: 3300020428
• Scaffold ID: Ga0211521_10397848
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 602
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3757
  • Long. (^o): 19.4167
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019113	Metagenome	231	Y
F042854	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211521_103978481	F042854	GGAG	LRKFDRELERYTRNRMRELRGETTTQWAEDPFIEAYTSRRIRELRLEHEMEQREIDLDNVALGGYTVATMEAYSGKS
Ga0211521_103978482	F019113	N/A	MTETFEVGDLVRDKLNMGTESYGLGVVVKIESVGLIGEAVSDGEPNTGWTEAEADPDIPGKRYDVYFNKFERTITFHGDYLEKI