Scaffold Ga0211521_10069357

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211521_10069357

Scaffold Ga0211521_10069357

Overview

Basic Information
Taxon OID	3300020428 Open in IMG/M
Scaffold ID	Ga0211521_10069357 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1762
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_025
Coordinates	Lat. (^o)	39.3757	Long. (^o)	19.4167	Alt. (m)		Depth (m)	50
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F022555	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211521_100693571	F006383	N/A	DKMWAVQQPGTLLRGRSSHHYGRLALVLEKAYAGPTPSNGYPPRQYVKMQWVATGERFEEMLTNAHNCFDIVSSCDTLGPEEN
Ga0211521_100693572	F022555	AGGAG	MAITPKFKPGQLVEYGSGDYHLVGLVKSTQFARRRGNPVLVLVQWCNERNTEEYIFQKDLKLVEEV

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.