Scaffold Ga0211521_10047799

Overview

Basic Information

• Taxon OID: 3300020428
• Scaffold ID: Ga0211521_10047799
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2226
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3757
  • Long. (^o): 19.4167
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F030886	Metagenome	184	Y
F059942	Metagenome	133	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211521_1004779912	F059942	GAGG	VKVGDLISFKPIDFGLEEWSNPCIVMLEYDSPNKGLWSVWCDGIFCVIDDTNYEITYLTF
Ga0211521_100477993	F030886	GGAG	MSYHGHPPPDYSKLGIGMVNPLHQIELKLKKVQEVLDNIGDQSALTANDLKCKIEKVLKE
Ga0211521_100477996	F018286	GGAG	MNMLTTFILVGMVDSFDSHFATVELNTTPASNAGPSMAVMPVSAFPCEIYEGKVFYVVKLHEEQDATIVCQKDAKSERVREETD
Ga0211521_100477997	F079212	AGGA	VNEYEKKLIDRCIESHYNMIRHHRRAIIELSRKMLKEPEMCTECFDFEIISESGRSGKV