Scaffold Ga0211521_10044488

Overview

Basic Information

• Taxon OID: 3300020428
• Scaffold ID: Ga0211521_10044488
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2331
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3757
  • Long. (^o): 19.4167
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F002192	Metagenome / Metatranscriptome	585	Y
F087220	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211521_100444881	F087220	N/A	AGTLLPSLLSGARSLLKSPAGQLALGGGAALGFSGMGSQPSGMRITRKMKSQARMIVNMVGGDLSAASGILGIDENTLVMILLKRFRNDGPVVTKAALRKTKSTIRKLHNMQDVLKSITPTAAGRRRAPMKRATTTTLIKN
Ga0211521_100444882	F000613	AGGAG	MPLVKKRLSVAAGATSDQVLAGTTYEYVDPGTRIVVASAVDTAGSATADTTMDFTVNNAEFSKNASVSALVTGEPFGWNGNYVMNDMVTTGQVRNRPIITFTNGTAATRTIDVAVFIGG
Ga0211521_100444884	F002192	N/A	MQSVFMEQFLLYSTFFIAILALFFGLYAGGRVAKVEKASKELDWDAVANITGDLATLKKTIQTLNNRLNGMHSPKVAEQELMLQLLQNQGQQKNGKMVGG