Scaffold Ga0211521_10026939

Overview

Basic Information

• Taxon OID: 3300020428
• Scaffold ID: Ga0211521_10026939
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3200
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3757
  • Long. (^o): 19.4167
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010950	Metagenome	297	Y
F018267	Metagenome	236	Y
F057352	Metagenome	136	Y
F070089	Metagenome	123	Y
F101902	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211521_1002693910	F057352	AGGAG	MKLWVLHGTYEAEMFTSVHLTEKGCALACVADVLEFLDVGDEETALQAMNDSYSYRTRETDGELTEAFEWDQEKMKNMTSKELWKIFADWTEISWDRMSDRSYYIDATPQMVQA
Ga0211521_1002693911	F010950	N/A	MMKIWVVRQTCTYDNETYVSSHLTEKGALITAIKTVREDMCDGFDEDELEDMRPGLPHNPEEDLMQYGSKQLRGIVNDWWEYSFDMNEYAQYQIYETQVEA
Ga0211521_100269395	F070089	AGTAGG	MFEGDSLDTSEYGLVLQISKTGHDTISAQVLFNDGDTWWIDSEKLEVASEGYKA
Ga0211521_100269397	F101902	GGCGG	MKVGNLVKRSDDHAHHGIVVEVGPQETVTDHGRTVAKVQWNDGDLTCEFVKTLEVLSEGR
Ga0211521_100269398	F018267	GAGG	VKVGDLISFKPKSFGDDDWSNPGIVLDSYISDYDGYDKRDEIWIVWLDGGKYMVNERNDDVVYLTPSSQLKP