Scaffold Ga0211521_10012395

Overview

Basic Information

• Taxon OID: 3300020428
• Scaffold ID: Ga0211521_10012395
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5226
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3757
  • Long. (^o): 19.4167
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067207	Metagenome	126	N
F087114	Metagenome	110	N
F087297	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211521_1001239512	F067207	N/A	MGIETLILGIVFNIYTLDNFDFFHQRANNNKTMNCRWEYVGKKKPEPQNPSLTLLGNVYYKQKCVRKELDK
Ga0211521_100123953	F087114	AGGA	MTEVIDFKTKRMLSKHRKKQKEKVIDAEFDVDIVAKDLEKVINKHIKRKTHGFDIACALADVSVQFIHDTAPSVASAQHILLTAMNHTLQEAIEYEKGELEDE
Ga0211521_100123955	F087297	AGGAG	MPVLVQYKIIDGFNEYNDYLIHQDDIDVTDEENLIIDLVGGDREDEEDYRTIEVVYAKSIGIKHAEFLQECFIAFPFGGNEWLRQLAIKERRDR