Scaffold Ga0211521

Basic Information
Taxon OID	3300020428 Open in IMG/M
Scaffold ID	Ga0211521_10001498 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020428 Open in IMG/M

Scaffold ID

Ga0211521_10001498 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18572
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (77.14%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

18572

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (77.14%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_025
Coordinates	Lat. (^o)	39.3757	Long. (^o)	19.4167	Alt. (m)	Depth (m)	50
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_025

Coordinates

Lat. (^o)

39.3757

Long. (^o)

19.4167

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043681	Metagenome / Metatranscriptome	156	Y
F045429	Metagenome / Metatranscriptome	153	N
F054892	Metagenome / Metatranscriptome	139	N
F056971	Metagenome / Metatranscriptome	137	N
F081880	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211521_1000149812	F043681	AGG	MAISYNNITYDKVLTPLRDKIRAEFKGALPTYFDSAFKDIGTKSLRIFPNSQTLQDKRTRSYINLYDIEMTYYLRTNRKDEKALDQMYKDVTRIVTVLINNRTGGDIPYFYAGQPTIEHDVDETDLSNILVAKINVPVLYEEVHEKFIRFATSNNNFFVTSTGSFYIVRN
Ga0211521_1000149819	F081880	AGG	MAITSVKFGTSAAGANNATYSPSQNPQIGTDLSKSYDGVVSRKTLGGTTFSVANYTTARKSRKLVYENLSEANKNKLVALFDLAKGQLNSFFYSEDGFSTNGFEVRFVNNELPVSETAYNVYSVEIEIEEQL
Ga0211521_1000149834	F056971	AGGAGG	MKEYTDKQINSMILHLRLNNVAEMYYIENEDGSSRNFFDYRTSTHLTREQVISLALETKWEQK
Ga0211521_100014985	F045429	GAGG	MNWLYGISYLVGICLWLSPLYAQSSLKDLQQIQLLSQDECIIVQVNADWNFKASLDLNGLNNCVWFNASIDNKEYGAIITDEWKIVSVPTIIMFEYGKEVKRFEAGLSFNLDKQKIIKEIKDEIDEIQLRKFQ
Ga0211521_100014987	F054892	AGG	MPEEMKQEEMKIVLENGKEVSFSDLSDEQKILVNHLRDLDMKMGRMNFEAQQLQAAKNAFSKELNDSFEEVEEDA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211521_10001498

Overview

Ecosystem & Geography

Associated Families

Sequences