NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211521_10000510

Scaffold Ga0211521_10000510


Overview

Basic Information
Taxon OID3300020428 Open in IMG/M
Scaffold IDGa0211521_10000510 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33581
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (73.77%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3757Long. (o)19.4167Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007266Metagenome / Metatranscriptome354Y
F028832Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0211521_1000051013F007266AGGAMENTKPISDSSSLNISLPMIIQAVTFIIMLVYGYSQLNARISFLEYQVAMNEEHIIDIEEDAEKNQDAEIPADIKQNQRIEYLEKEVERLRDQ
Ga0211521_1000051058F028832GAGMLVRRSSKGKKIYIFKPRTKENITYKFSNDEVVSFDAQNKAYIVTSEGAVIKRTNSWITAQTTYDSECKKHYSDTTGKIKVGVHTLVNAVATKL

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