Scaffold Ga0211603_10129722

Overview

Basic Information

• Taxon OID: 3300020427
• Scaffold ID: Ga0211603_10129722
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 932
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_065
• Coordinates
  • Lat. (^o): -35.2792
  • Long. (^o): 26.382
  • Depth (m): 850

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016597	Metagenome / Metatranscriptome	246	N
F029557	Metagenome / Metatranscriptome	188	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211603_101297221	F029557	GGAG	MATPSNTHQKSIEFDEVNLFSIDKAVYDWFNTKHATNIQGRRVPVMFGSWERFAQMQDNKQDDNLNRMRDPSGMLILPLISIRRGDVTYNVDRFVFPQADGSPRVQLSRRVAM
Ga0211603_101297222	F016597	N/A	VSLDRSGAESPGQRHGHQPFEVSTGDSSYGLFFTPREMELFNDYNTELLGIIAQTGVNYYRIEPDSSDPNSIYGESEVKVTRDPVQVMCWVMLDEPEVETNSFTVDTRRRIELYMHKDRLTELDLVPRMGDFVGYDNQYFEILRAGVPNFVFSYPQTKLGVILRCLSVREGVFDPDRDFVNKEYVGDAENPY