Scaffold Ga0211603_10037759

Overview

Basic Information

• Taxon OID: 3300020427
• Scaffold ID: Ga0211603_10037759
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1776
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_065
• Coordinates
  • Lat. (^o): -35.2792
  • Long. (^o): 26.382
  • Depth (m): 850

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004418	Metagenome / Metatranscriptome	439	Y
F024128	Metagenome	207	Y
F054947	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211603_100377591	F004418	N/A	NNRFRLFCETIGSLGFISIYVLMAWYGDSVSIATIFGIQIISSSLHIINAYLRNSLNLMVLNIIVIVIAVFGIAKMYLY
Ga0211603_100377594	F024128	GGAG	MNINCTHLSEKPKNYEERGNASLSDNLKYINNSVSHLEINRFCGVKDTMGYQVVCKAITINVVTGKKAFVVWAVQEGYDLEDVIQKAKDELKNRIVMGAPVLQHAAPDEDVKNLVEY
Ga0211603_100377595	F054947	GAG	MQMIPKNKLGKIFRDFNNEILEELIPNDMVVPKLRMQFSMQNLSWLCRNLQIKNRHHPEIKQTMAKLNTLRMKILLKG