Scaffold Ga0211603_10030567

Overview

Basic Information

• Taxon OID: 3300020427
• Scaffold ID: Ga0211603_10030567
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1990
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_065
• Coordinates
  • Lat. (^o): -35.2792
  • Long. (^o): 26.382
  • Depth (m): 850

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024128	Metagenome	207	Y
F076483	Metagenome	118	Y
F084713	Metagenome	112	Y
F099435	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211603_100305672	F099435	AGGA	MTLMCKDSTLKEINNLGKKYGDPKRQEALLYHVKNCSSYVVSPNDNEHWLCGSTIVTHWAHETGYSRKYYGLAFPDNFESWSFHNDELAGEAFDSHHELENY
Ga0211603_100305673	F024128	GGAG	MVMITKKDAQEYLDKRGPASLSDNLKYINNSVSHLEINRFCGTKDTMGYQVVCKAITINVVTGKKSFVVWAVQEGYDDLEVIVQKAKDELKNRIVMGMPVLQHASPDEDIKNLVEY
Ga0211603_100305675	F076483	GGAG	MQMITKNKLSQIFKEHNIEVDRISKIRTLQTLLNDTTLDIPLMRRLVTTSNVRWILRNVKVNNSEHINLNKIIKLIKEVI
Ga0211603_100305677	F084713	N/A	MPKLIIEKTHSKKQYGKDRYRVVRLVDSHRLSLLETKFDEPSMMRYLQGLPNTYNYEIRNKTGD