NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211603_10025690

Scaffold Ga0211603_10025690


Overview

Basic Information
Taxon OID3300020427 Open in IMG/M
Scaffold IDGa0211603_10025690 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2193
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_065
CoordinatesLat. (o)-35.2792Long. (o)26.382Alt. (m)Depth (m)850
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004418Metagenome / Metatranscriptome439Y
F027651Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0211603_100256904F004418N/AMKKFLNWLKDDWKNNRFRLFCETIGSICFIAIYVLMAWYGESVSILNIFLIQIVGSTLHIINAYLRNSVNLIALNCIVIAIALFGLAKMALSI
Ga0211603_100256905F027651N/AMKIRNNIKSNKDLKVKKVNLNKIVESNIKWEAVGLANSLNQNYHNWLECVTDKKDYCIESDKFGHGFGVFSGSKYWRIEASQNSGCNYIIDQKNSKMYSTAHKEKHVWGYVVKSNSANHSRGDILTRNFKKVGNVLTGNKVNLGMPNSHYPNYTVCWSHNEIWERN

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