NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211603_10025488

Scaffold Ga0211603_10025488


Overview

Basic Information
Taxon OID3300020427 Open in IMG/M
Scaffold IDGa0211603_10025488 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2204
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_065
CoordinatesLat. (o)-35.2792Long. (o)26.382Alt. (m)Depth (m)850
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014154Metagenome / Metatranscriptome265Y
F054103Metagenome / Metatranscriptome140Y
F064802Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0211603_100254881F014154N/AMSEDIFKIEPVGNKSLVIENKRKTISPFNSAKHLKTANIPALCDQCVYRSIEDGGNGKCPKYEAGAVCAIRDDFINLINTLDTRNPEDLKSMMDMLAKLSFENVLMALTQAKMDGNIPDRNTKSEVNTLLAIVKSIN
Ga0211603_100254882F054103N/AMMKIYFNANNKATLQALEQCGVKNVLLSHRYSYANIKRFRPKFESIFMVAGNKGNAEKYHEFLKNKREYYDYATQFDVFYNMDETLKYLNKERQEGIDWTLPVLQENYLNHLSRLRPKPDSYVCLGEIHGKIETEDQIRKLPMNIKYHGLAKGKYINRRFFESLDTSAWISAAMSKKGEVWNAGGTTTSVFFGNRGRGMIPILRHMCEVYKDNFEKINVNTDDVIDGEYYALLKAPFAFLYMPMLKHYGYYNDNFIN
Ga0211603_100254883F064802N/AMPQPASQMNVRSLRIEECIRDLVLYQHEKLLHETVDQMSTLPQTVIPHEFVDIPDEERRGMIRALRWVLDDEDIFQCQQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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