Scaffold Ga0211603_10008075

Overview

Basic Information

• Taxon OID: 3300020427
• Scaffold ID: Ga0211603_10008075
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4282
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_065
• Coordinates
  • Lat. (^o): -35.2792
  • Long. (^o): 26.382
  • Depth (m): 850

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002667	Metagenome	539	Y
F017252	Metagenome	242	Y
F060453	Metagenome	133	N
F075462	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211603_100080751	F075462	N/A	MTLNPDFVTKEEVARRLKAAQKETKVAKTISIPISSWALLDQVRNKLGKKNANETIMYCIKEIAVEEGLES
Ga0211603_1000807512	F002667	N/A	MTIYGMEVLSAALILVACISAGLSCVFIARNRGSINKHSRQRIKDYEADIKYLGEVKKADAADYRQEILRLKGSINKMKQGTTVTDTDMQNSGLGEVIMQLIPNKYRKAASFLVPQVEEAVKKDPAIVERIYEKIKSANNQQTRPKSEAQTTDTL
Ga0211603_100080756	F017252	AGGTGG	MPQVIQGYRVTTKPSDTTAESTYVADIVAAGAAATTVHYPAQYRSIAISLAIKNQDAANPCTFSVNGQPAISLSAGADQNINNQSIVSVQVTPGALGTVDLLAQVTPMYLTTEQARFNLMRG
Ga0211603_100080758	F060453	N/A	MAFKLKTGKTINKVLAGAGIVALGTLVLNQVAPGIAQSTVGKVVLPAISYGVGGLEAAAGAVVTEVAGHSLRSFSGVNALDNVQTESL