NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211603_10005385

Scaffold Ga0211603_10005385


Overview

Basic Information
Taxon OID3300020427 Open in IMG/M
Scaffold IDGa0211603_10005385 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5412
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_065
CoordinatesLat. (o)-35.2792Long. (o)26.382Alt. (m)Depth (m)850
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025142Metagenome203Y
F064802Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0211603_100053852F064802N/AMLQNVSQTSVKVLKNEESIRDLILFQKEKLLHEFADPAAMLPTTLIPPLLVDIPDDERRGIIRALRWVLAEEEMFNRE
Ga0211603_100053854F025142GAGGMVGSIDMVGRDVEFRVKTGSRATLQLTVADSSGNAKNLSNATTYATGIWKVWKPDGTLIINGALTFTTRASGVVSYALLASDTVAANVGRWEGEVELKDASGNISEQTKSFTHFQEESY

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