Scaffold Ga0211603

Basic Information
Taxon OID	3300020427 Open in IMG/M
Scaffold ID	Ga0211603_10004844 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020427 Open in IMG/M

Scaffold ID

Ga0211603_10004844 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5749
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5749

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (80.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_065
Coordinates	Lat. (^o)	-35.2792	Long. (^o)	26.382	Alt. (m)	Depth (m)	850
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_065

Coordinates

Lat. (^o)

-35.2792

Long. (^o)

26.382

Alt. (m)

Depth (m)

850

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F000659	Metagenome / Metatranscriptome	952	Y
F002715	Metagenome / Metatranscriptome	535	Y
F006919	Metagenome	362	Y
F078839	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211603_100048442	F000659	GGA	MKSFNGYLQEANSKYIVSKNPNDKKWYVMGHVGNNKWMPVSNGFKNKAQAQKWAKSQDKVDIAARGEI
Ga0211603_100048443	F078839	AGG	MSEEKLTTSIVLITFLALWFLVMFTFGLLVYQTSSYQGQVDDLIKENAKITTLWMEKF
Ga0211603_100048447	F006919	GGA	MKSFKQHLKEYVSYSTSDLVFMNNGQGSASSGLMIPLSGPMFKRIWPDTIRTTVFHTTDLSGLEKLKRLEGGKKTISAFFSMMARYMEGGIASGGGIVVEMEADVLVSAADDIMSQVDNKGRRWVEVSWFANAQRWGTGPKFAVVERELNDLIRNLVVKHLEPIIGNRARTEHEYVLWGNMKRELKDSKKLSLVIKDYFDGVEKIIKKNSEVMSSIFYGYAKSKRQTENSWDEQIVNNIEITKVHIIDFTTKAPSLKGQFDASKDLAKSNKWPMKVWDATETMDLEVYTRQVAQAEVRTM
Ga0211603_100048448	F000245	AGGA	MKTFTRFKESKLDDKLDKYVSDEIKKRKLAKFPVNATDDIKMRMKPNKPVFKFPSPTGSMMIHVFLRKMAPPAKKHTMAFNYQLEEK
Ga0211603_100048449	F002715	AGGA	MAAEELQSVKLEVGLLKNEVEVRGRQIETLLQKLDLTTDKLQQLTVQIIKLNTRQEDYLRHSSNMNDEFKLLHTRIGDLHDKQLAANKEIEERLDALDQYKSKLMGMIIVVGGVVGTIVATALAHFKD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211603_10004844

Overview

Ecosystem & Geography

Associated Families

Sequences