NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211603_10000612

Scaffold Ga0211603_10000612


Overview

Basic Information
Taxon OID3300020427 Open in IMG/M
Scaffold IDGa0211603_10000612 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19959
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (68.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_065
CoordinatesLat. (o)-35.2792Long. (o)26.382Alt. (m)Depth (m)850
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003373Metagenome / Metatranscriptome491Y
F012682Metagenome / Metatranscriptome278Y
F072735Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0211603_1000061211F012682AGGMAAETQVLRDCEKKYIAKFFSDASESDVKKIDLSTLAWAKHTMTLSGAASPNFKIGEVITVGTAETFLVTGFTAGASTLEVVGWDNTNKKATAIDTGSSNGDAISGSVSGANTRTLANSGNLTGLEWNVLVTKMLWITNGLTVAIEWDGSTAEKYIAELSGNGSWSMPGNEWPGIPINATGDTSEVLGDIQFSTTGHGAGDSYTIIMELKKQAPGFDIPAYEENTKLGYRVDYLKGNFT
Ga0211603_1000061222F003373AGGMTVELDNKNLKVIKLDNGEILFSKVQVTDTSKTSGYLELHWPMKVMMKHDKEEKVTQIALLKWLPFTDNTHIPLSTRSIMSVSDLGENYQDLYLNSVSEDNTHTQDQELSKMSSLLRDFEPEGYMN
Ga0211603_100006123F072735N/AMLSRILLAICIIFVSTLSYAQPRTEAIIHDTIVKRDTYKTEDILLLFKSCYETIYFLGNTKYKRTKKTLKEEDVSRQCFCICDKIRAKYEPRTFLDRPPIEIHNIIKPLTSECIEERGQIWYEHEKQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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