Scaffold Ga0211536_10008966

Overview

Basic Information

• Taxon OID: 3300020426
• Scaffold ID: Ga0211536_10008966
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000378 (ERX555992-ERR599112)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4653
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_056
• Coordinates
  • Lat. (^o): -15.3216
  • Long. (^o): 43.2843
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007004	Metagenome / Metatranscriptome	360	Y
F007121	Metagenome / Metatranscriptome	357	Y
F010942	Metagenome / Metatranscriptome	297	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211536_100089662	F010942	GGAG	MPDQSRESEKQILTLTKDVEHLQYVIDELEKECEFVKKHFTKKNTERLDDVKTIHGRIDQHLQTDLDFHENVRKKISEKFETFDERIRQLDRWKWATWGALIVIGGLCGYFVPLPKLIGT
Ga0211536_100089663	F007004	AGGA	MKNLLIGISLLLFIGCANSNKYERPTVRIVGEAQMTKLPNGNYEVTPRWIKDRFNTENSMVKQLEDCRESK
Ga0211536_100089668	F007121	N/A	MLKTILLTWVLLFGFTTPALGGWQIVLQDELQEPTLDKLIDWVPEEVPRTVSFYFDTDGDGKFDIKIAYSLIEAYACKQNCVRGIVDNGDHWILPAPGVNYYVVKRWILYRYINDEDWRGLDKTQQWIYKYPYNDDWLREKFYPLWPELRMK