Scaffold Ga0211549_10357371

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211549_10357371

Scaffold Ga0211549_10357371

Overview

Basic Information
Taxon OID	3300020425 Open in IMG/M
Scaffold ID	Ga0211549_10357371 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001765 (ERX556083-ERR598964)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	596
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_149
Coordinates	Lat. (^o)	34.155	Long. (^o)	-49.6942	Alt. (m)		Depth (m)	740
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037260	Metagenome	168	Y
F040145	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211549_103573711	F040145	N/A	MTKKEWLREKVFVDTYGRPYNLSDVPMTHMKRSEAFSKRKLSKKEINYLYKKDQTTIIIEGC
Ga0211549_103573712	F037260	AGG	MAKKKKDIPFHIAHNYKHWTSDQGYKFWARDEEDAKLYLEVIGAHLGSLKEVEVKSV

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