NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211549_10167525

Scaffold Ga0211549_10167525


Overview

Basic Information
Taxon OID3300020425 Open in IMG/M
Scaffold IDGa0211549_10167525 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001765 (ERX556083-ERR598964)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)864
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_149
CoordinatesLat. (o)34.155Long. (o)-49.6942Alt. (m)Depth (m)740
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040678Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0211549_101675251F040678N/AQVNYLAGHKSMAMTKRYDHANEERYGAAIETLDAAGKTGSAEALAAARWKRT

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