Scaffold Ga0211620_10120417

Overview

Basic Information

• Taxon OID: 3300020424
• Scaffold ID: Ga0211620_10120417
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000242 (ERX556056-ERR599138)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1129
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_048
• Coordinates
  • Lat. (^o): -9.4112
  • Long. (^o): 66.3281
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029108	Metagenome / Metatranscriptome	189	Y
F040577	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211620_101204172	F040577	N/A	MDELQKISAEILDIFNNKIESLTKEQAEVLNLHNNSMNFYVKLGDPQKAMWEAKETLKYLTQITND
Ga0211620_101204175	F029108	N/A	MKQINPNKYLVGKKKLGKGKVGAKGGVGVPTGAFGGKSKFNKKKLDKSE