Scaffold Ga0211620_10060945

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211620_10060945

Scaffold Ga0211620_10060945

Overview

Basic Information
Taxon OID	3300020424 Open in IMG/M
Scaffold ID	Ga0211620_10060945 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000242 (ERX556056-ERR599138)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1631
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_048
Coordinates	Lat. (^o)	-9.4112	Long. (^o)	66.3281	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031249	Metagenome	183	Y
F054844	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211620_100609454	F031249	GGAGG	VKVGDLVRVRTKHHGEKLGVVVEIDKELGVRVKAQNHPRDIWGLPQDVKVLVSV
Ga0211620_100609456	F054844	AGG	MILEAGTLVRWRGSVGLVMGPCKKRWAKDDDVWVMWHNESEPKIEQCRFLEVLSESR

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