Scaffold Ga0211620_10014470

Overview

Basic Information

• Taxon OID: 3300020424
• Scaffold ID: Ga0211620_10014470
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000242 (ERX556056-ERR599138)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3471
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_048
• Coordinates
  • Lat. (^o): -9.4112
  • Long. (^o): 66.3281
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001419	Metagenome / Metatranscriptome	698	Y
F006348	Metagenome / Metatranscriptome	375	Y
F053343	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211620_100144704	F006348	GGAGG	MNKKFIVENLEFDPKFKTEKEIEDLKFKRDQAIGVWDIEGKTDDDLVAKLFDEVQNYMGVYLTSLSYCNNRPHPLTAFK
Ga0211620_100144708	F001419	AGGAG	MMYEFDGYDEILKCYEGVTDHHASTSFEVGLMNSLYYELFHSYPETKTHTL
Ga0211620_100144709	F053343	N/A	VVRRWDSKRSVTNLPRQVGLGGYNEYIKRNLSLHSNHHSIMNPQAHRSTEELKTIVKALSKLSLLNTPEENQRLFDCEQELKKRKREDDFINAHFQVITY