NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211620_10002842

Scaffold Ga0211620_10002842


Overview

Basic Information
Taxon OID3300020424 Open in IMG/M
Scaffold IDGa0211620_10002842 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000242 (ERX556056-ERR599138)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8063
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_048
CoordinatesLat. (o)-9.4112Long. (o)66.3281Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030401Metagenome185Y
F072256Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0211620_1000284216F072256N/AMKSKIKDILVQDPFLQFLPEPHKYYDLKRKKYVARSVSEVVKENTYVSKEMEKAAIRGTAIHEAVQIWCETKDKTLALAYAKDYAHWIEHLINYRMWETWDCVANELRMVDRKRDIAGSCDVILQHKDTGMLCLADFKTQEVYKKKNHRLQMGGYVSLLYQNYPTVDLWSCRVIYITPDGIKTQDYNPQECMYDYEEARTLYFSKQVKF
Ga0211620_1000284217F030401GGAMESLFGNSAKATLQKMVKKGLLKVSDLDTPTSGWFIAMGYEREPGTGKWKRLLRTKSGATPSLRLENIPKWKNTLTGKITFDPVEYEKQN
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