NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211620_10002147

Scaffold Ga0211620_10002147


Overview

Basic Information
Taxon OID3300020424 Open in IMG/M
Scaffold IDGa0211620_10002147 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000242 (ERX556056-ERR599138)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9290
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_048
CoordinatesLat. (o)-9.4112Long. (o)66.3281Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038722Metagenome165N
F039181Metagenome164N

Sequences

Protein IDFamilyRBSSequence
Ga0211620_100021474F039181GGAGGMPKGKYYEYQIKRSALDQDYLSGNIDDFQYARESLDLDLEYEPYILAQTINSEIAKKQHNIGDN
Ga0211620_100021478F038722AGGAGMDRGGLIMNITESRDEAFEAIAEMLRSNIKKTKIASKLAADYCVSDKTVYKWITKVEEMYDIEPIESILQQQKSELKSEIYQDLIRDYHKAKTDKDDELRRKIGAILNNTYLKKITFN

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