NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211525_10243704

Scaffold Ga0211525_10243704


Overview

Basic Information
Taxon OID3300020423 Open in IMG/M
Scaffold IDGa0211525_10243704 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000315 (ERX556027-ERR599062)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)750
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_037
CoordinatesLat. (o)20.8188Long. (o)63.6158Alt. (m)Depth (m)600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049700Metagenome / Metatranscriptome146Y
F077398Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0211525_102437042F077398AGGAGGMTVKKKSKSKEITKATVKVKEGKVDVYTKAYNDTIKRAGNVYSADYSLIDETIVDIKKMSRKVSTSDYAANNVYLILQDALKKITLAEK
Ga0211525_102437043F049700GAGVATKLNVDPGSDIGKKLWERHQADEYTHVNNYKEAICINCFTKDATSATIADICGECAGKRGREPLLATITQKLYGLCFFCGHYKFEIEQINARFCRGCH

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