NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211525_10078423

Scaffold Ga0211525_10078423


Overview

Basic Information
Taxon OID3300020423 Open in IMG/M
Scaffold IDGa0211525_10078423 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000315 (ERX556027-ERR599062)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1505
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_037
CoordinatesLat. (o)20.8188Long. (o)63.6158Alt. (m)Depth (m)600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005148Metagenome / Metatranscriptome410Y
F008755Metagenome / Metatranscriptome328Y
F009404Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0211525_100784231F008755GGAGMNKSRVARDLWRKVFNDNLIDLKDSDARKQVVSEFLNDPVNIKAGWKKKDARFMRLGFQKVAKENNFNVMNIGVTPTPSRSKTQKGSMSINVKTKQKNPPPMGEAIKPPTEQEKKFGALPQTPQLEGQQAQATYYTAQSVGQIFETIVNIISARTGCTPLSQNERIALGEAWMPIFVEYFSGENSKWVMVAVITIPIALRILSEI
Ga0211525_100784232F009404AGGAGMSDEIEHIQPKGESLVKHCPICGVEFDEIVLTNRWLKCDSCETIFQVKVKTGE
Ga0211525_100784233F005148GGAGMKQKKYEEYLKRTLPESEEVECKKCGKKFYDDFNLVCLGALDMCLLCANRNLDKETIKEKYHE
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