Scaffold Ga0211702_10179000

Overview

Basic Information

• Taxon OID: 3300020422
• Scaffold ID: Ga0211702_10179000
• Source Dataset Name: Marine prokaryotic communities collected during Tara Oceans survey from station TARA_076 - TARA_B100000513 (ERX555999-ERR599126)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 635
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -21.0073
  • Long. (^o): -35.3344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051968	Metagenome	143	Y
F056678	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211702_101790001	F056678	GAG	MSDTIFIDAVEGAKVAVFKGVGNEVGRAKTAKMLAYILDTHKIFGEVMFCSSMDFATEAGFADDGDARKLFNDAVEMRG
Ga0211702_101790002	F051968	N/A	NSIVNKREKIMNIEKVTNMMCDFVAYVDDFYNEKSGIYPIKGMTDMMVIKAVQKHVTSVGMNFCADSVDREKVRDIILADNNLIFNN