NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211702_10083509

Scaffold Ga0211702_10083509


Overview

Basic Information
Taxon OID3300020422 Open in IMG/M
Scaffold IDGa0211702_10083509 Open in IMG/M
Source Dataset NameMarine prokaryotic communities collected during Tara Oceans survey from station TARA_076 - TARA_B100000513 (ERX555999-ERR599126)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)893
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_076
CoordinatesLat. (o)-21.0073Long. (o)-35.3344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006892Metagenome362Y
F065123Metagenome128Y
F086163Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0211702_100835091F065123GAGGMKIKSLTDAIKQFRDNIEDSDYANLGGKGKYLTVPYRLKFVREYFGERIRIITDSYDLPDNIHKFKTEIYLDDKLVSTGLSKQTQSKDKEFEKQSTVSCGRALSFLGFF
Ga0211702_100835092F006892AGAAGMNKTTATGIVKPLRQRIKDLETINAKHQKINGELQQQVTQKDKKIEELMERINNPLKKMREDGDLXKLNL
Ga0211702_100835093F086163N/AKTKNGFSYSKKKCPRVPYHSDCLQIALYSKLLPKHKPFLTYASDSDRVIFTPENCVELRTESLQYYYEELVLYQKCWEKKLELADGDAKVLAMLCKPDLSEIRKDGFWWKGIDPDIIKRFRSYYE

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