Scaffold Ga0211702_10022522

Overview

Basic Information

• Taxon OID: 3300020422
• Scaffold ID: Ga0211702_10022522
• Source Dataset Name: Marine prokaryotic communities collected during Tara Oceans survey from station TARA_076 - TARA_B100000513 (ERX555999-ERR599126)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1707
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD10-C281 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -21.0073
  • Long. (^o): -35.3344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003365	Metagenome / Metatranscriptome	491	Y
F029238	Metagenome / Metatranscriptome	189	N
F058520	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211702_100225221	F058520	N/A	QNNIEIRTQDKKSYNFLLIRPGEKQGKYFLIIKDNDKDYNFTIKGWFLYKDDLPTEKLSNFGYQDRPAAYKIEINELIPLEENVRQDKF
Ga0211702_100225223	F003365	AGGAG	MLKQIGKEWKKKEEGGTFTADHLSPSQLNMNIDQWHYNYNVLTAAERKKLPANLKMIFGGLVGQALQNLITEKLTIEEVMKGKK
Ga0211702_100225225	F029238	N/A	MKLKPQTEEKSKGGFKERRKECLMKSKDIPTVDIKGKKYSTVNERHRHLLQYFPEARFNEEILFHDNERVVVKTELHI