NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211653_10154883

Scaffold Ga0211653_10154883


Overview

Basic Information
Taxon OID3300020421 Open in IMG/M
Scaffold IDGa0211653_10154883 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1011
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012837Metagenome / Metatranscriptome277Y
F031303Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
Ga0211653_101548831F031303N/AMEAIKKLRDKNIFNDQSIVESMIEKNWMGSPVIKRSLLRVRKVREDDCVCEELGEADGKAYKIKYINILTV
Ga0211653_101548832F012837N/AMRKHHNKLYYGKFRHKTEFKMPGSLMFYPTTDEHLLKLKKDYADAPDMNKLADFILQNRKNIKFRFQDRKAVFYTNYEQSLALIDNFWEYWVGSKSVDPKFRNLGKNVIGCDRLPHGKYKYQVYLKKDAHLKVDNTQKSNLWHFIERNADNCLVTQWEVIDWLEDKCPYCFGGYFYVTEERFITPVYMMAQQAIAKVIEFRKVKNGSNKKVKR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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